Some calcium-channel blockers: kinetic and in silico studies on paraoxonase-I

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Özet

Many drugs, which are used in clinical treatments, show pharmacological effects on enzyme activity with an essential role in the pathogenesis of various diseases. Paraoxonase-I (PON1) is a member of the mammalian lactonase enzyme family, serves to the prevention of blood vessel plaque formation by protecting high-density lipoprotein and low-density lipoprotein against oxidation. In the current study, we aimed to contribute to drug discovery and to determine the interaction of some calcium channel blockers (CCBs) with PON1. For this purpose, first, the PON1 enzyme was purified from fresh human serum by using different chromatographic techniques. Then, the various concentrations of CCBs were tested on the paraoxonase activity of PON1. IC 50 values were found as 41.00, 48.00, and 180 µM for nimodipine, cinnarizine, and nilvadipine, respectively. PON1 was effectively inhibited by these drugs (K is ranging between 22.13 ± 1.13 and 174.12 ± 20.52 µM). Of these drugs, only the inhibition mechanism of cinnarizine was competitive on PON1. Besides, the molecular docking analysis of cinnarizine was applied to detailed the binding interactions on the active site of PON1. The docking scores for the Glide standard-precision (SP), and Glide extra-precision (XP) modes for 1V04 receptor monitored to be −5.001, and −6.079, respectively. We determined that the CCBs reduced PON1 enzyme activity both in vitro and in silico conditions, significantly. Therefore, further biological studies such as gene expression and in vivo experiments should be done for these drugs. Communicated by Ramaswamy H. Sarma. © 2020 Informa UK Limited, trading as Taylor & Francis Group.

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AlanDeğerDil
dc.contributor.authorTürkeş, Cüneyt
dc.contributor.authorDemir, Yeliz
dc.contributor.authorBeydemir, Şükrü
dc.date.accessioned2026-10-18T20:27:37.042814450Z
dc.date.available2026-10-18T20:27:37.042814450Z
dc.date.issued2022
dc.description.abstractMany drugs, which are used in clinical treatments, show pharmacological effects on enzyme activity with an essential role in the pathogenesis of various diseases. Paraoxonase-I (PON1) is a member of the mammalian lactonase enzyme family, serves to the prevention of blood vessel plaque formation by protecting high-density lipoprotein and low-density lipoprotein against oxidation. In the current study, we aimed to contribute to drug discovery and to determine the interaction of some calcium channel blockers (CCBs) with PON1. For this purpose, first, the PON1 enzyme was purified from fresh human serum by using different chromatographic techniques. Then, the various concentrations of CCBs were tested on the paraoxonase activity of PON1. IC 50 values were found as 41.00, 48.00, and 180 µM for nimodipine, cinnarizine, and nilvadipine, respectively. PON1 was effectively inhibited by these drugs (K is ranging between 22.13 ± 1.13 and 174.12 ± 20.52 µM). Of these drugs, only the inhibition mechanism of cinnarizine was competitive on PON1. Besides, the molecular docking analysis of cinnarizine was applied to detailed the binding interactions on the active site of PON1. The docking scores for the Glide standard-precision (SP), and Glide extra-precision (XP) modes for 1V04 receptor monitored to be −5.001, and −6.079, respectively. We determined that the CCBs reduced PON1 enzyme activity both in vitro and in silico conditions, significantly. Therefore, further biological studies such as gene expression and in vivo experiments should be done for these drugs. Communicated by Ramaswamy H. Sarma. © 2020 Informa UK Limited, trading as Taylor & Francis Group.
dc.identifier.doi10.1080/07391102.2020.1806927
dc.identifier.eissn1538-0254
dc.identifier.endpage85
dc.identifier.issn0739-1102
dc.identifier.issue1
dc.identifier.pmid32783605
dc.identifier.scopus2-s2.0-85089442447
dc.identifier.startpage77
dc.identifier.urihttps://rdlopen.rawdatalibrary.net/r/ebyu/12750
dc.identifier.volume40
dc.identifier.wosWOS:000558996800001
dc.language.isoen
dc.publisherTaylor and Francis Ltd.
dc.relation.ispartofJournal of Biomolecular Structure and Dynamics
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectcalcium-channel blocker
dc.subjectchromatography
dc.subjectHDL
dc.subjectinhibition
dc.subjectmolecular docking
dc.subjectParaoxonase
dc.subjectAnimals
dc.subjectAryldialkylphosphatase
dc.subjectCalcium
dc.subjectCalcium Channel Blockers
dc.subjectHumans
dc.subjectKinetics
dc.subjectMolecular Docking Simulation
dc.subjectaryldialkylphosphatase 1
dc.subjectcinnarizine
dc.subjectnilvadipine
dc.subjectnimodipine
dc.subjectcalcium channel blocking agent
dc.subjectPON1 protein, human
dc.subjectArticle
dc.subjectcomputer model
dc.subjectcontrolled study
dc.subjectdrug mechanism
dc.subjectdrug protein binding
dc.subjectdrug structure
dc.subjectenzyme active site
dc.subjectenzyme activity
dc.subjectenzyme inhibition
dc.subjecthuman
dc.subjectIC50
dc.titleSome calcium-channel blockers: kinetic and in silico studies on paraoxonase-I
dc.typeArticle
dspace.entity.typePublication
rdl.citation.scopus69
rdl.citation.wos56
rdl.departmentFaculty of Pharmacy, Department of Biochemistry, Erzincan Binali Yıldırım University, Erzincan, Turkey.
rdl.source.indexSCOPUS
rdl.source.indexWOS
rdl.source.indexPUBMED
rdl.wos.indexScience Citation Index Expanded (SCI-EXPANDED)