Molecular docking and vibrational spectroscopy studies of (E)-N′-hydroxy-1,3-diphenyl-4,5-dihydro-1H-pyrazole-5-carboximidamide

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The experimental (FT-IR and Laser-Raman spectra) and theoretical (DFT studies) vibrational modes of (E)-N′-Hydroxy-1,3-diphenyl-4,5-dihydro-1H-pyrazole-5-carboximidamide were studied in detail. FT-IR and Laser-Raman data were collected in the range 4000-400 cm −1 and 4000-100 cm −1 , respectively in solid phase. Optimized structural parameters and frequency values were theoretically calculated using DFT/B3LYP and DFT/M06-2X chemical methods with 6–311++G (d,p) basis set by Gaussian 09W software. Theoretical frequency assignments and potential energy distributions (PED) analysis were performed by VEDA 4 program. With the optimized structures, the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energies and clouds were obtained and evaluated. Additionally, molecular docking studies for potent pyruvate kinase activators (PDB codes: 4RPP, 4FXJ, 4QG6, 4WJ8) and previously used targets (PDB codes: 2QU5, 2W1G and 2VTO-three different cancers related proteins) were employed for docking by AutoDock Vina program considering Swiss-Target reports and related literature knowledge. © 2019 Elsevier B.V.

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AlanDeğerDil
dc.contributor.authorSert, Yusuf
dc.contributor.authorGökce, Halil
dc.contributor.authorChandra
dc.contributor.authorMahendra, M.
dc.contributor.authorSrikantamurthy, N.
dc.contributor.authorÇırak, Çağrı
dc.date.accessioned2026-10-18T20:28:27.811769783Z
dc.date.available2026-10-18T20:28:27.811769783Z
dc.date.issued2019
dc.description.abstractThe experimental (FT-IR and Laser-Raman spectra) and theoretical (DFT studies) vibrational modes of (E)-N′-Hydroxy-1,3-diphenyl-4,5-dihydro-1H-pyrazole-5-carboximidamide were studied in detail. FT-IR and Laser-Raman data were collected in the range 4000-400 cm −1 and 4000-100 cm −1 , respectively in solid phase. Optimized structural parameters and frequency values were theoretically calculated using DFT/B3LYP and DFT/M06-2X chemical methods with 6–311++G (d,p) basis set by Gaussian 09W software. Theoretical frequency assignments and potential energy distributions (PED) analysis were performed by VEDA 4 program. With the optimized structures, the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energies and clouds were obtained and evaluated. Additionally, molecular docking studies for potent pyruvate kinase activators (PDB codes: 4RPP, 4FXJ, 4QG6, 4WJ8) and previously used targets (PDB codes: 2QU5, 2W1G and 2VTO-three different cancers related proteins) were employed for docking by AutoDock Vina program considering Swiss-Target reports and related literature knowledge. © 2019 Elsevier B.V.
dc.identifier.doi10.1016/j.molstruc.2019.02.019
dc.identifier.eissn1872-8014
dc.identifier.endpage91
dc.identifier.issn0022-2860
dc.identifier.scopus2-s2.0-85061629754
dc.identifier.startpage79
dc.identifier.urihttps://rdlopen.rawdatalibrary.net/r/ebyu/13629
dc.identifier.volume1184
dc.identifier.wosWOS:000461047100009
dc.language.isoen
dc.publisherElsevier B.V.
dc.relation.ispartofJournal of Molecular Structure
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectFT-IR
dc.subjectLaser-Raman spectra
dc.subjectMolecular docking
dc.subjectPyrazole
dc.subjectMolecular orbitals
dc.subjectPotential energy
dc.subjectRaman scattering
dc.subjectFrequency assignments
dc.subjectHighest occupied molecular orbital
dc.subjectLaser Raman spectra
dc.subjectLowest unoccupied molecular orbital
dc.subjectOptimized structures
dc.subjectPotential energy distribution
dc.subjectPyrazoles
dc.subjectMolecular modeling
dc.titleMolecular docking and vibrational spectroscopy studies of (E)-N′-hydroxy-1,3-diphenyl-4,5-dihydro-1H-pyrazole-5-carboximidamide
dc.typeArticle
dspace.entity.typePublication
rdl.citation.scopus1
rdl.citation.wos1
rdl.source.indexSCOPUS
rdl.source.indexWOS
rdl.wos.indexScience Citation Index Expanded (SCI-EXPANDED)