Investigation of potential paraoxonase-i inhibitors by kinetic and molecular docking studies: Chemotherapeutic drugs

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Özet

Background: Metabolic processes in living organisms are closely related to the catalytic activity of enzymes. Changes in enzyme activity cause various diseases e.g., neurological, cancer, metabolic and cardiovascular. Most of the current therapeutic drugs available in clinical utilization function as enzyme inhibitors. Objective: The main goal of the current study to contribute to this growing drug design area (such as medication discovery and development) by investigating protein-drug interactions. Methods: The paraoxonase-I (PON1) enzyme was purified from human serum by using different and simple chromatographic techniques. Additionally, it was investigated inhibition effects of some chemotherapeutic drugs on the PON1. Results: The purification results for PON1 depicted a 3880.83 EU/mg proteins specific activity and the molecular weight was calculated as 43 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. These drugs found to strongly inhibit PON1, with IC50 values ranging from 0.222T ± 0.002 to 688.300±0.897 μM. Ki constants for vincristine sulfate, epirubicin hydrochloride, and doxorubicin hydrochloride were determined to be 0.235±0.032 μM, 221.400±29.270 μM, and 913.300±201.000 μM, respectively. Conclusion: These drugs showed in competitive inhibition. Also, the molecular docking poses of these agents inside the catalytic sites of 1V04 and 3SRE were analysis. © Bentham Science Publishers.

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AlanDeğerDil
dc.contributor.authorTürketş, Cüneyt
dc.date.accessioned2026-10-18T20:28:49.868345259Z
dc.date.available2026-10-18T20:28:49.868345259Z
dc.date.issued2019
dc.description.abstractBackground: Metabolic processes in living organisms are closely related to the catalytic activity of enzymes. Changes in enzyme activity cause various diseases e.g., neurological, cancer, metabolic and cardiovascular. Most of the current therapeutic drugs available in clinical utilization function as enzyme inhibitors. Objective: The main goal of the current study to contribute to this growing drug design area (such as medication discovery and development) by investigating protein-drug interactions. Methods: The paraoxonase-I (PON1) enzyme was purified from human serum by using different and simple chromatographic techniques. Additionally, it was investigated inhibition effects of some chemotherapeutic drugs on the PON1. Results: The purification results for PON1 depicted a 3880.83 EU/mg proteins specific activity and the molecular weight was calculated as 43 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. These drugs found to strongly inhibit PON1, with IC50 values ranging from 0.222T ± 0.002 to 688.300±0.897 μM. Ki constants for vincristine sulfate, epirubicin hydrochloride, and doxorubicin hydrochloride were determined to be 0.235±0.032 μM, 221.400±29.270 μM, and 913.300±201.000 μM, respectively. Conclusion: These drugs showed in competitive inhibition. Also, the molecular docking poses of these agents inside the catalytic sites of 1V04 and 3SRE were analysis. © Bentham Science Publishers.
dc.description.sponsorshipThis research was financially supported by the Research Fund of Erzincan Binali Yıldırım University. The author is thankful to Erzincan Binali Yıldırım University for support (Grant no. FBA-2017-501).
dc.identifier.doi10.2174/0929866526666190226162225
dc.identifier.eissn1875-5305
dc.identifier.endpage402
dc.identifier.issn0929-8665
dc.identifier.issue6
dc.identifier.pmid30819074
dc.identifier.scopus2-s2.0-85065916276
dc.identifier.startpage392
dc.identifier.urihttps://rdlopen.rawdatalibrary.net/r/ebyu/14037
dc.identifier.volume26
dc.identifier.wosWOS:000474202900001
dc.language.isoen
dc.publisherBentham Science Publishers
dc.relation.ispartofProtein and Peptide Letters
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectchemotherapeutic drug
dc.subjectchromatography
dc.subjectHDL
dc.subjectinhibition
dc.subjectmolecular docking
dc.subjectParaoxonase
dc.subjectprotein-drug interactions
dc.subjectAryldialkylphosphatase
dc.subjectCatalytic Domain
dc.subjectDoxorubicin
dc.subjectDrug Design
dc.subjectEnzyme Inhibitors
dc.subjectEpirubicin
dc.subjectHumans
dc.subjectKinetics
dc.subjectMolecular Docking Simulation
dc.subjectProtein Binding
dc.subjectProtein Conformation
dc.subjectThermodynamics
dc.subjectVincristine
dc.subjectantineoplastic agent
dc.subjectaryldialkylphosphatase 1
dc.subjectparaoxonase I inhibitor
dc.subjectunclassified drug
dc.subjectvincristine sulfate
dc.subjectenzyme inhibitor
dc.subjectPON1 protein, human
dc.subjectArticle
dc.subjectcompetitive inhibition
dc.subjectdrug inhibition
dc.titleInvestigation of potential paraoxonase-i inhibitors by kinetic and molecular docking studies: Chemotherapeutic drugs
dc.typeArticle
dspace.entity.typePublication
rdl.citation.scopus83
rdl.citation.wos83
rdl.departmentDepartment of Biochemistry, Faculty of Pharmacy, Erzincan Binali Yildirim University, Erzincan, 24100, Turkey.
rdl.oa.statusgreen
rdl.source.indexSCOPUS
rdl.source.indexWOS
rdl.source.indexPUBMED
rdl.wos.indexScience Citation Index Expanded (SCI-EXPANDED)