Fluorenyl-phthalimide hybrids as potent aldose reductase inhibitors with selective anticancer activity: Rational design, synthesis, and molecular insights

ArticleAçık Erişim

Özet

Metabolic reprogramming in cancer cells creates actionable vulnerabilities for precision oncology. Aldose reductase (ALR2, AKR1B1; EC 1.1.1.21), a cytosolic NADPH-dependent oxidoreductase, has emerged as a multifunctional player in tumor progression, drug resistance, and oxidative stress modulation, yet remains underexploited as a cancer target. In this study, we report the rational design, synthesis, and biological evaluation of a focused series of fluorenyl-phthalimide carboxylic-acid hybrids (5a-5l) as dual-acting agents with selective anticancer potential and potent ALR2 inhibition. Among them, compound 5a exhibited the strongest ALR2 inhibition with a KI of 8.71 ± 0.81 nM, far surpassing the clinical comparator epalrestat (KI = 232.10 ± 14.42 nM). In MCF-7 and A549 carcinoma cells, 5a demonstrated moderate antiproliferative activity (IC50 = 52.04 μM and 192.91 μM, respectively) while sparing normal bronchial epithelial cells, indicating tumor selectivity. Molecular docking and MM-GBSA calculations (ΔGbind = −44.02 kcal/mol) revealed a consistent bidentate hydrogen bonding network supporting high-affinity binding involving Tyr48, His110, and Trp111, further stabilized by crystallographic water molecules. To explore structure-activity relationships, a Random Forest regression model was developed using 24 descriptors derived from QikProp. The model achieved strong predictive performance (Q2CV = 0.71), and SHAP analysis identified water/gas partition coefficient, skin permeability, and human oral absorption as the most influential features shaping inhibitory potency. In silico ADME/Tox profiling supported the drug-like nature of compound 5a, with no major CYP or hERG liabilities predicted. Collectively, these findings position 5a as a first-in-class ALR2-targeted anticancer lead, introducing a chemically novel and mechanistically validated chemotype for further development within the framework of metabolically targeted precision therapies. © 2025 Elsevier Inc.

Anahtar Kelimeler

RDL Kalıcı Bağlantı (PID)
https://rdlopen.rawdatalibrary.net/r/ebyu/10699Resmi atıflarda kullanılan kalıcı adres
Tam Kayıt
AlanDeğerDil
dc.contributor.authorGundogdu, Saliha
dc.contributor.authorDuran, Hatice Esra
dc.contributor.authorArslan, Mustafa
dc.contributor.authorÇetinkaya, Büşra Demir
dc.contributor.authorTürkeş, Cüneyt
dc.date.accessioned2026-10-18T20:25:51.828009809Z
dc.date.available2026-10-18T20:25:51.828009809Z
dc.date.issued2025
dc.description.abstractMetabolic reprogramming in cancer cells creates actionable vulnerabilities for precision oncology. Aldose reductase (ALR2, AKR1B1; EC 1.1.1.21), a cytosolic NADPH-dependent oxidoreductase, has emerged as a multifunctional player in tumor progression, drug resistance, and oxidative stress modulation, yet remains underexploited as a cancer target. In this study, we report the rational design, synthesis, and biological evaluation of a focused series of fluorenyl-phthalimide carboxylic-acid hybrids (5a-5l) as dual-acting agents with selective anticancer potential and potent ALR2 inhibition. Among them, compound 5a exhibited the strongest ALR2 inhibition with a KI of 8.71 ± 0.81 nM, far surpassing the clinical comparator epalrestat (KI = 232.10 ± 14.42 nM). In MCF-7 and A549 carcinoma cells, 5a demonstrated moderate antiproliferative activity (IC50 = 52.04 μM and 192.91 μM, respectively) while sparing normal bronchial epithelial cells, indicating tumor selectivity. Molecular docking and MM-GBSA calculations (ΔGbind = −44.02 kcal/mol) revealed a consistent bidentate hydrogen bonding network supporting high-affinity binding involving Tyr48, His110, and Trp111, further stabilized by crystallographic water molecules. To explore structure-activity relationships, a Random Forest regression model was developed using 24 descriptors derived from QikProp. The model achieved strong predictive performance (Q2CV = 0.71), and SHAP analysis identified water/gas partition coefficient, skin permeability, and human oral absorption as the most influential features shaping inhibitory potency. In silico ADME/Tox profiling supported the drug-like nature of compound 5a, with no major CYP or hERG liabilities predicted. Collectively, these findings position 5a as a first-in-class ALR2-targeted anticancer lead, introducing a chemically novel and mechanistically validated chemotype for further development within the framework of metabolically targeted precision therapies. © 2025 Elsevier Inc.
dc.description.sponsorshipAuthor Saliha Gundogdu, a 100/2000 The Council of Higher Education (CoHE) PhD Scholar in Organic Smart and \u0130nnovative Materials Subsection. This work was supported by the Research Fund of the Sakarya University (Project no: 2023-23-50-100).
dc.identifier.doi10.1016/j.bioorg.2025.108689
dc.identifier.eissn1090-2120
dc.identifier.issn0045-2068
dc.identifier.pmid40570667
dc.identifier.scopus2-s2.0-105008786422
dc.identifier.startpage108689
dc.identifier.urihttps://rdlopen.rawdatalibrary.net/r/ebyu/10699
dc.identifier.volume163
dc.identifier.wosWOS:001521421700001
dc.language.isoen
dc.publisherAcademic Press Inc.
dc.relation.ispartofBioorganic Chemistry
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectAldose reductase inhibitors
dc.subjectFluorenyl-phthalimide hybrids
dc.subjectMachine learning
dc.subjectPrecision oncology
dc.subjectRational drug design
dc.subjectSelective cytotoxicity
dc.subjectTargeted therapy
dc.subjectAldehyde Reductase
dc.subjectAntineoplastic Agents
dc.subjectCell Proliferation
dc.subjectDose-Response Relationship, Drug
dc.subjectDrug Design
dc.subjectDrug Screening Assays, Antitumor
dc.subjectEnzyme Inhibitors
dc.subjectHumans
dc.subjectMolecular Docking Simulation
dc.subjectMolecular Structure
dc.subjectPhthalimides
dc.subjectStructure-Activity Relationship
dc.subject2 [(9h fluoren 2 yl)carbamoyl] 3,4,5,6 tetrabromobenzoic acid
dc.subject2 [(9h fluoren 2 yl)carbamoyl] 3,4,5,6 tetrachlorobenzoic acid
dc.subject2 [(9h fluoren 2 yl)carbamoyl] 5 fluorobenzoic acid
dc.subject2 [(9h fluoren 2 yl)carbamoyl] 6 fluorobenzoic acid
dc.subject2 [(9h fluoren 2 yl)carbamoyl] 6 nitrobenzoic acid
dc.subject2 [(9h fluoren 2 yl)carbamoyl]benzoic acid
dc.subject2 [(9h fluoren 2 yl)carbamoyl]c 5 methylcyclohexane 1 carboxylic acid
dc.subject2 [(9h fluoren 2 yl)carbamoyl]cyclohexane 1 carboxylic acid
dc.subject4 [(9h fluoren 2 yl)amino] 3 methyl 4 oxobutanoic acid
dc.subject4 [(9h fluoren 2 yl)amino] 4 oxobut 2 enoic acid
dc.subject4 [(9h fluoren 2 yl)amino] 4 oxobutanoic acid
dc.titleFluorenyl-phthalimide hybrids as potent aldose reductase inhibitors with selective anticancer activity: Rational design, synthesis, and molecular insights
dc.typeArticle
dspace.entity.typePublication
rdl.citation.scopus69
rdl.citation.wos66
rdl.departmentDepartment of Pharmaceutical Toxicology, Faculty of Pharmacy, Erzincan Binali Yıldırım University, Erzincan 24002, Türkiye. | Department of Biochemistry, Faculty of Pharmacy, Erzincan Binali Yıldırım University, Erzincan 24002, Türkiye. Electronic address: cuneyt.turkes@erzincan.edu.tr.
rdl.source.indexSCOPUS
rdl.source.indexWOS
rdl.source.indexPUBMED
rdl.wos.indexScience Citation Index Expanded (SCI-EXPANDED)
rdl.wos.indexIndex Chemicus (IC)