Fluorenyl-phthalimide hybrids as potent aldose reductase inhibitors with selective anticancer activity: Rational design, synthesis, and molecular insights
Özet
Metabolic reprogramming in cancer cells creates actionable vulnerabilities for precision oncology. Aldose reductase (ALR2, AKR1B1; EC 1.1.1.21), a cytosolic NADPH-dependent oxidoreductase, has emerged as a multifunctional player in tumor progression, drug resistance, and oxidative stress modulation, yet remains underexploited as a cancer target. In this study, we report the rational design, synthesis, and biological evaluation of a focused series of fluorenyl-phthalimide carboxylic-acid hybrids (5a-5l) as dual-acting agents with selective anticancer potential and potent ALR2 inhibition. Among them, compound 5a exhibited the strongest ALR2 inhibition with a KI of 8.71 ± 0.81 nM, far surpassing the clinical comparator epalrestat (KI = 232.10 ± 14.42 nM). In MCF-7 and A549 carcinoma cells, 5a demonstrated moderate antiproliferative activity (IC50 = 52.04 μM and 192.91 μM, respectively) while sparing normal bronchial epithelial cells, indicating tumor selectivity. Molecular docking and MM-GBSA calculations (ΔGbind = −44.02 kcal/mol) revealed a consistent bidentate hydrogen bonding network supporting high-affinity binding involving Tyr48, His110, and Trp111, further stabilized by crystallographic water molecules. To explore structure-activity relationships, a Random Forest regression model was developed using 24 descriptors derived from QikProp. The model achieved strong predictive performance (Q2CV = 0.71), and SHAP analysis identified water/gas partition coefficient, skin permeability, and human oral absorption as the most influential features shaping inhibitory potency. In silico ADME/Tox profiling supported the drug-like nature of compound 5a, with no major CYP or hERG liabilities predicted. Collectively, these findings position 5a as a first-in-class ALR2-targeted anticancer lead, introducing a chemically novel and mechanistically validated chemotype for further development within the framework of metabolically targeted precision therapies. © 2025 Elsevier Inc.
Anahtar Kelimeler
Tam Kayıt
| Alan | Değer | Dil |
|---|---|---|
| dc.contributor.author | Gundogdu, Saliha | |
| dc.contributor.author | Duran, Hatice Esra | |
| dc.contributor.author | Arslan, Mustafa | |
| dc.contributor.author | Çetinkaya, Büşra Demir | |
| dc.contributor.author | Türkeş, Cüneyt | |
| dc.date.accessioned | 2026-10-18T20:25:51.828009809Z | |
| dc.date.available | 2026-10-18T20:25:51.828009809Z | |
| dc.date.issued | 2025 | |
| dc.description.abstract | Metabolic reprogramming in cancer cells creates actionable vulnerabilities for precision oncology. Aldose reductase (ALR2, AKR1B1; EC 1.1.1.21), a cytosolic NADPH-dependent oxidoreductase, has emerged as a multifunctional player in tumor progression, drug resistance, and oxidative stress modulation, yet remains underexploited as a cancer target. In this study, we report the rational design, synthesis, and biological evaluation of a focused series of fluorenyl-phthalimide carboxylic-acid hybrids (5a-5l) as dual-acting agents with selective anticancer potential and potent ALR2 inhibition. Among them, compound 5a exhibited the strongest ALR2 inhibition with a KI of 8.71 ± 0.81 nM, far surpassing the clinical comparator epalrestat (KI = 232.10 ± 14.42 nM). In MCF-7 and A549 carcinoma cells, 5a demonstrated moderate antiproliferative activity (IC50 = 52.04 μM and 192.91 μM, respectively) while sparing normal bronchial epithelial cells, indicating tumor selectivity. Molecular docking and MM-GBSA calculations (ΔGbind = −44.02 kcal/mol) revealed a consistent bidentate hydrogen bonding network supporting high-affinity binding involving Tyr48, His110, and Trp111, further stabilized by crystallographic water molecules. To explore structure-activity relationships, a Random Forest regression model was developed using 24 descriptors derived from QikProp. The model achieved strong predictive performance (Q2CV = 0.71), and SHAP analysis identified water/gas partition coefficient, skin permeability, and human oral absorption as the most influential features shaping inhibitory potency. In silico ADME/Tox profiling supported the drug-like nature of compound 5a, with no major CYP or hERG liabilities predicted. Collectively, these findings position 5a as a first-in-class ALR2-targeted anticancer lead, introducing a chemically novel and mechanistically validated chemotype for further development within the framework of metabolically targeted precision therapies. © 2025 Elsevier Inc. | |
| dc.description.sponsorship | Author Saliha Gundogdu, a 100/2000 The Council of Higher Education (CoHE) PhD Scholar in Organic Smart and \u0130nnovative Materials Subsection. This work was supported by the Research Fund of the Sakarya University (Project no: 2023-23-50-100). | |
| dc.identifier.doi | 10.1016/j.bioorg.2025.108689 | |
| dc.identifier.eissn | 1090-2120 | |
| dc.identifier.issn | 0045-2068 | |
| dc.identifier.pmid | 40570667 | |
| dc.identifier.scopus | 2-s2.0-105008786422 | |
| dc.identifier.startpage | 108689 | |
| dc.identifier.uri | https://rdlopen.rawdatalibrary.net/r/ebyu/10699 | |
| dc.identifier.volume | 163 | |
| dc.identifier.wos | WOS:001521421700001 | |
| dc.language.iso | en | |
| dc.publisher | Academic Press Inc. | |
| dc.relation.ispartof | Bioorganic Chemistry | |
| dc.rights | info:eu-repo/semantics/openAccess | |
| dc.subject | Aldose reductase inhibitors | |
| dc.subject | Fluorenyl-phthalimide hybrids | |
| dc.subject | Machine learning | |
| dc.subject | Precision oncology | |
| dc.subject | Rational drug design | |
| dc.subject | Selective cytotoxicity | |
| dc.subject | Targeted therapy | |
| dc.subject | Aldehyde Reductase | |
| dc.subject | Antineoplastic Agents | |
| dc.subject | Cell Proliferation | |
| dc.subject | Dose-Response Relationship, Drug | |
| dc.subject | Drug Design | |
| dc.subject | Drug Screening Assays, Antitumor | |
| dc.subject | Enzyme Inhibitors | |
| dc.subject | Humans | |
| dc.subject | Molecular Docking Simulation | |
| dc.subject | Molecular Structure | |
| dc.subject | Phthalimides | |
| dc.subject | Structure-Activity Relationship | |
| dc.subject | 2 [(9h fluoren 2 yl)carbamoyl] 3,4,5,6 tetrabromobenzoic acid | |
| dc.subject | 2 [(9h fluoren 2 yl)carbamoyl] 3,4,5,6 tetrachlorobenzoic acid | |
| dc.subject | 2 [(9h fluoren 2 yl)carbamoyl] 5 fluorobenzoic acid | |
| dc.subject | 2 [(9h fluoren 2 yl)carbamoyl] 6 fluorobenzoic acid | |
| dc.subject | 2 [(9h fluoren 2 yl)carbamoyl] 6 nitrobenzoic acid | |
| dc.subject | 2 [(9h fluoren 2 yl)carbamoyl]benzoic acid | |
| dc.subject | 2 [(9h fluoren 2 yl)carbamoyl]c 5 methylcyclohexane 1 carboxylic acid | |
| dc.subject | 2 [(9h fluoren 2 yl)carbamoyl]cyclohexane 1 carboxylic acid | |
| dc.subject | 4 [(9h fluoren 2 yl)amino] 3 methyl 4 oxobutanoic acid | |
| dc.subject | 4 [(9h fluoren 2 yl)amino] 4 oxobut 2 enoic acid | |
| dc.subject | 4 [(9h fluoren 2 yl)amino] 4 oxobutanoic acid | |
| dc.title | Fluorenyl-phthalimide hybrids as potent aldose reductase inhibitors with selective anticancer activity: Rational design, synthesis, and molecular insights | |
| dc.type | Article | |
| dspace.entity.type | Publication | |
| rdl.citation.scopus | 69 | |
| rdl.citation.wos | 66 | |
| rdl.department | Department of Pharmaceutical Toxicology, Faculty of Pharmacy, Erzincan Binali Yıldırım University, Erzincan 24002, Türkiye. | Department of Biochemistry, Faculty of Pharmacy, Erzincan Binali Yıldırım University, Erzincan 24002, Türkiye. Electronic address: cuneyt.turkes@erzincan.edu.tr. | |
| rdl.source.index | SCOPUS | |
| rdl.source.index | WOS | |
| rdl.source.index | PUBMED | |
| rdl.wos.index | Science Citation Index Expanded (SCI-EXPANDED) | |
| rdl.wos.index | Index Chemicus (IC) |
